Season 3 (2013)
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1. BoBoiBoy vs. Ejo Jo
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20min
August 11, 2013
2. BoBoiBoy vs. Ejo Jo — Final Battle
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20min
August 18, 2013
3. In Memory of Probe
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20min
August 25, 2013
4. Operation Cocoa
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20min
September 15, 2013
5. Cocoa Jumbo's Rampage
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20min
September 29, 2013
6. Mr. Baga Ga's Service
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20min
October 13, 2013
7. Rob, Robert, and Roberto's Robbery
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20min
October 27, 2013
8. The Five Sly Scammers!
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20min
December 22, 2013
9. The Battle on the Moon
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20min
February 16, 2014
10. Papa Zola & Mama Zila
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20min
April 6, 2014
11. Mama Zila Attacks
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20min
April 20, 2014
12. Adu Du's Mom
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20min
May 4, 2014
13. Adu Du's Return To Evil
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20min
May 18, 2014
14. PangoBot & The Onion Monster
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20min
October 26, 2014
15. The Arsonist
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20min
November 2, 2014
16. BoBoiBoy Fire Ignites!
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20min
November 9, 2014
17. Danger: BoBoiBot
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20min
March 1, 2015
18. Everybody Loves BoBoiBot
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20min
April 5, 2015
19. BoBoiBoy's Water Surprise
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20min
September 30, 2015
20. Rise Up! BoBoiBoy Water!
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20min
December 24, 2015
21. Special Episode: Saving Planet Earth (Part 1)
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20min
December 25, 2015
22. Special Episode: Saving Planet Earth (Part 2)
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20min
December 26, 2015
23. Special Episode: Saving Planet Earth (Part 3)
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20min
December 27, 2015
24. Enemies, Old and New
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20min
May 28, 2016
25. Between Friend and Foe
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20min
June 4, 2016
26. See You Next Time, BoBoiBoy
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20min
June 11, 2016